NAME

trees-bootstrap - Compare support for partitions between different files.

SYNOPSIS

trees-bootstrap file1 [file2 ... ] –predicates predicate file [OPTIONS]

Compare support for partitions between different files.

-h, –help: Produce help message.
-s arg (=10%), –skip arg (=10%): Number of trees to skip.
-u arg, –until arg: Read until this number of trees.
-m arg, –max arg: Thin tree samples down to this number of trees.
-x arg, –subsample arg: Factor by which to sub-sample.
–predicates arg: Predicates to examine.
–min-support arg (=0.1): Minimum value of predicates to consider interesting..
-V, –verbose: Output more log messages on stderr.

–bootstrap: Do block bootstrapping to get a CI on the posterior probabilities.
–samples arg (=10000): Number of bootstrap samples.
–pseudocount arg (=1): Extra 0/1 to add to bootstrap samples.
–blocksize arg: Block size to use in block boostrap.
–seed arg: Random seed.

–separation arg (=0): Only report trees/partitions if they differ by this many LODs
–confidence arg (=0.95): Width of confidence intervals
–LOD-table arg: Write the partitions LOD10’s to a file.

BAli-Phy online help: <http://www.bali-phy.org/docs.php>.

Please send bug reports to <bali-phy-users@googlegroups.com>.

Benjamin Redelings.