reconcile - This program outputs the reconciliation that minimizes
the number of duplications
reconcile [OPTIONS] gene-tree
species-tree [gene-species-map]
This program outputs the reconciliation that minimizes the number
of duplications
- --help
- Display help (this text).
- -V, --version
- Print version and exit
- -r, --reroot
any|random|no
- Reroot the tree to minimize the number of implied duplications/losses if
the most parsimonious reconciliation is chosen. Default is
"no".
- -w --weights
FLOAT FLOAT
- Determine the relative importance of duplications vs losses. First weight
is for duplications and the second for losses. The default is 1.0,0.0
which counts duplications only. Weights are required to be positive.
- 0
- Successful program execution.
- 1
- Some error occurred
primeDTLSR(1), primeDLRS(1), primeGEM(1),
chainsaw(1), reconcile(1), reroot(1),
tree2leafnames(1), treesize(1)